Documentation cleanup for public release (#123)

Prepares the docs for the public release announcement: removes obsolete/dead
material, fixes drift between the API reference and the actual routes, and
standardizes on the default GitHub Pages URL.

- Remove Vagrant entirely: delete Vagrantfile, docs/dev_setup.md, and stale
  vagrant references in .gitignore/.dockerignore; rewrite openresty/README.md
  to describe the actual (currently unused) directory and point to
  ops/nginx_conf/ for the real OpenResty config.
- Delete docs/Update 4.11.md (personal scratch changelog) and drop both its
  and dev_setup.md's references from docs/README.md's Legacy Documentation
  section.
- Remove checkmark emoji from docs/contributing.md's PR Requirements list.
- Bring the auth model docs up to date with the code: document
  GET /api/auth/oidc/start + /callback, the /api/permission and /api/group
  RBAC routers, the /api/dns/dynamic/* sub-API, and /api/api-token (self
  -service PATs) in both nodejs/api.md and docs/api.md; add the missing
  "Clear Host Cache" section; drop the invite-token/SSH-key endpoints that no
  longer exist in nodejs/routes/user.js; note admin-only routes. Mention
  OIDC/LDAP/RBAC as core features in README.md.
- Keep nodejs/api.md and docs/api.md fully in sync (same body, differing only
  in Jekyll front matter / relative links) instead of letting them drift.
- Fix Node.js version references (20.x -> 22.x) in README.md and
  docs/installation.md to match ops/install.sh and the Dockerfile.
- Note that the manual nginx-conf/systemd install steps in README.md and
  docs/installation.md won't auto-track repo changes the way install.sh's
  symlink approach does, and recommend install.sh.
- Update the stale test/unit file lists in docs/contributing.md and
  nodejs/test/README.md to match the actual directory contents.
- Add npm run test:integration to README.md's Running Tests section.
- Add nodejs/conf/, nodejs/controller/, and nodejs/migrations/ to the project
  structure diagrams in README.md, docs/architecture.md, and
  docs/contributing.md.
- Standardize "CloudFlare" -> "Cloudflare" everywhere to match the actual API
  value in nodejs/models/dns_provider.js.
- Add the missing app_auth__adminGroups row to DEPLOYMENT.md's app_* table.
- Delete docs/CNAME (custom domain) so GitHub Pages serves from the default
  https://theta42.github.io/proxy/, matching docs/README.md.

Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>

docs/contributing.md

@@ -71,9 +71,19 @@ npm run test:watch
 ```
 test/
 ├── unit/                       # Unit tests for isolated components
+│   ├── basicauth.test.js
 │   ├── callback_queue.test.js
+│   ├── dynamic_record.test.js
+│   ├── host_features.test.js
 │   ├── host_lookup.test.js
-│   └── unix_socket.test.js
+│   ├── hostname_validate.test.js
+│   ├── host_sso.test.js
+│   ├── oidc.test.js
+│   ├── password_policy.test.js
+│   ├── roles.test.js
+│   ├── safe_redirect.test.js
+│   ├── unix_socket.test.js
+│   └── wildcard_matchany.test.js
 ├── integration/                # Integration tests
 │   └── dns_provider.test.js
 └── helpers/                    # Test utilities
@@ -171,6 +181,9 @@ Understanding the codebase:
 
 ```
 nodejs/
+├── conf/                # Configuration (base.js, environment overlays, secrets.js)
+├── controller/          # App-level wiring (pubsub, startup)
+├── migrations/          # One-off Redis data migration scripts
 ├── models/              # Data models (Host, User, DNS providers)
 ├── routes/              # API route handlers
 ├── services/            # Background services (lookup, scheduler)
@@ -232,12 +245,12 @@ nodejs/
 
 ### PR Requirements
 
-- ✅ All tests must pass (CI/CD runs automatically)
-- ✅ Tests run on Node.js 18.x, 20.x, and 22.x
-- ✅ No merge conflicts with `master`
-- ✅ Code follows project conventions
-- ✅ New features include tests
-- ✅ Documentation updated if needed
+- All tests must pass (CI/CD runs automatically)
+- Tests run on Node.js 18.x, 20.x, and 22.x
+- No merge conflicts with `master`
+- Code follows project conventions
+- New features include tests
+- Documentation updated if needed
 
 ### CI/CD Process
 
@@ -305,7 +318,7 @@ class Host extends Table {
 ### Adding API Endpoints
 
 1. **Add route** in appropriate file (`routes/`)
-2. **Update API documentation** (`nodejs/api.md`)
+2. **Update API documentation** (`nodejs/api.md` and `docs/api.md` — keep them in sync)
 3. **Test the endpoint** manually and add integration tests if needed
 
 ## Getting Help